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Crystal structure of the 22KDA N-terminal fragment of mouse apolipoprotein E

Analyse Crystal structure of the 22KDA N-terminal fragment of mouse apolipoprotein E in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YA9
Type: protein
Length: 168 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Apolipoprotein E
UniProt: P08226
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Apolipoprotein E	protein	168	79% helix, 0% strand	P08226

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.32	0.77	10	empty

Compared structures

1YA9 · Crystal Structure of the 22kDa N-Terminal Fragment of Mouse Apolipoprotein E · the same entry in another collection · chain A against A, TM-score 1.00
P08226 · AlphaFold monomer V2.0 prediction for apolipoprotein E (P08226) · a predicted model of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08226
Elsewhere: RCSB PDB 1YA9 · PDBe 1YA9 · UniProt P08226

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