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Solution structure of the rat SLY1 N-terminal domain

Analyse Solution structure of the rat SLY1 N-terminal domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1Y9J
Type: protein
Length: 140 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SEC1 family domain containing protein 1
UniProt: Q62991
Pockets: 1 · best druggability 0.25

Structure

solution nmr · 1 distinct chain · 37% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SEC1 family domain containing protein 1	protein	140	37% helix, 20% strand	Q62991

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.25	0.73	12	empty

Compared structures

1Y9J · Solution structure of the rat Sly1 N-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
Q62991 · AlphaFold monomer V2.0 prediction for SEC1 family domain-containing protein 1 (Q62991) · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q62991
Elsewhere: RCSB PDB 1Y9J · PDBe 1Y9J · UniProt Q62991

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