Research workbench
High-resolution crystal structure of the restriction- modification controller protein C.AHDI from aeromonas hydrophila
Analyse High-resolution crystal structure of the restriction- modification controller… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Y7Y
- Type
- protein
- Length
- 135 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C.AHDI
- UniProt
- Q7X0F0
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 70% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C.AHDI | protein | 69 | 70% helix, 1% strand | Q7X0F0 |
| B | C.AHDI | protein | 66 | 71% helix, 2% strand | Q7X0F0 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.34 | 0.77 | 14 | empty |
| 2 | 50 | 0.29 | 0.75 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 716 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 1Y7Y · High-resolution crystal structure of the restriction-modification controller protein… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7X0F0
- Elsewhere: RCSB PDB 1Y7Y · PDBe 1Y7Y · UniProt Q7X0F0
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