Research workbench
The crystal structure of aminopeptidase I from borrelia burgdorferi B31
Analyse The crystal structure of aminopeptidase I from borrelia burgdorferi B31 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Y7E
- Type
- protein
- Length
- 404 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable M18-family aminopeptidase 1
- EC
- 3.4.11.-
- UniProt
- Q45055
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable M18-family aminopeptidase 1 (EC 3.4.11.-) | protein | 404 | 32% helix, 21% strand | Q45055 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.60 | 0.85 | 20 | empty |
| 2 | 93 | 0.40 | 0.77 | 20 | empty |
| 3 | 93 | 0.37 | 0.75 | 24 | empty |
| 4 | 72 | 0.31 | 0.74 | 22 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 1Y7E · The Crystal Structure of Aminopeptidase I from Borrelia burgdorferi B31 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q45055
- Elsewhere: RCSB PDB 1Y7E · PDBe 1Y7E · UniProt Q45055
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