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NMR structure of the amino-terminal domain from the TFB1 subunit of yeast tfiih

Analyse NMR structure of the amino-terminal domain from the TFB1 subunit of yeast tfiih in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1Y5O
Type: protein
Length: 115 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA polymerase II transcription factor B 73 kda subunit
UniProt: P32776
Pockets: 1 · best druggability 0.41

Structure

solution nmr · 1 distinct chain · 18% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase II transcription factor B 73 kda subunit	protein	115	18% helix, 36% strand	P32776

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	80	0.41	0.79	19	empty

Compared structures

1Y5O · NMR structure of the amino-terminal domain from the Tfb1 subunit of yeast TFIIH · the same entry in another collection · chain A against A, TM-score 1.00
P32776 · AlphaFold monomer V2.0 prediction for general transcription and DNA repair factor iih… · a predicted model of the same protein · chain A against A, TM-score 0.87

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32776
Elsewhere: RCSB PDB 1Y5O · PDBe 1Y5O · UniProt P32776

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