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Solution structure of the functional domain of paracoccus denitrificans cytochrome C552 in the reduced state

Analyse Solution structure of the functional domain of paracoccus denitrificans… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1C7M
Type: protein
Length: 100 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (cytochrome C552)
UniProt: P54820
Ligands: HEC
Pockets: 1 · best druggability 0.75

Structure

solution nmr · 1 distinct chain · 39% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (cytochrome C552)	protein	100	39% helix, 0% strand	P54820

Ligands and binding sites

HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	208	0.75	0.89	35	HEC

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

1C7M · Solution structure of the functional domain of paracoccus denitrificans cytochrome C552… · the same entry in another collection · chain A against A, TM-score 1.00
P54820 · AlphaFold monomer V2.0 prediction for cytochrome C-552 (P54820) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54820
Elsewhere: RCSB PDB 1C7M · PDBe 1C7M · UniProt P54820

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