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X-ray crystal structure of protein MM0500 from methanosarcina mazei. northeast structural genomics consortium target MAR10.

Analyse X-ray crystal structure of protein MM0500 from methanosarcina mazei. northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1XUV
Type: protein
Length: 489 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein MM0500
UniProt: Q8PZJ2
Pockets: 5 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Hypothetical protein MM0500	protein	163	28% helix, 40% strand	Q8PZJ2

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	585	0.82	0.87	52	empty
2	564	0.82	0.87	53	empty
3	578	0.82	0.87	51	empty
4	106	0.36	0.74	15	empty
5	76	0.31	0.73	14	empty

Interfaces

2 interfaces between chains.

A–C · 981 Å² buried · 8 hydrogen bonds · protein-protein
B–C · 13 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

1XUV · X-Ray Crystal Structure of Protein MM0500 from Methanosarcina mazei. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8PZJ2
Elsewhere: RCSB PDB 1XUV · PDBe 1XUV · UniProt Q8PZJ2

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