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The solution structure of cytochrome C6 from the thermophilic cyanobacterium synechococcus elongatus, NMR, 20 structures

Analyse The solution structure of cytochrome C6 from the thermophilic cyanobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1C6S
Type: protein
Length: 87 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C6
UniProt: P0A3Y0
Ligands: HEC
Pockets: 1 · best druggability 0.69

Structure

solution nmr · 1 distinct chain · 38% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C6	protein	87	38% helix, 2% strand	P0A3Y0

Ligands and binding sites

HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	148	0.69	0.88	29	HEC

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

1C6S · The solution structure of cytochrome C6 from the thermophilic cyanobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
P0A3Y0 · AlphaFold monomer V2.0 prediction for cytochrome C6 (P0A3Y0) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A3Y0
Elsewhere: RCSB PDB 1C6S · PDBe 1C6S · UniProt P0A3Y0

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