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Crystal structure of reduced cytochrome C6 from the green algae scenedesmus obliquus

Analyse Crystal structure of reduced cytochrome C6 from the green algae scenedesmus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1C6R
Type: protein
Length: 88 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C6
UniProt: P57736
Ligands: HEM, CD
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 58% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C6	protein	88	58% helix, 2% strand	P57736

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
CD · Cadmium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	203	0.74	0.89	28	HEM

Modifications

Observed in the structure: 2 cofactor (heme attachment).

Compared structures

1C6R · Crystal structure of reduced cytochrome C6 from the green algae scenedesmus obliquus · the same entry in another collection · chain A against A, TM-score 1.00
P57736 · AlphaFold monomer V2.0 prediction for cytochrome C6 (P57736) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P57736
Elsewhere: RCSB PDB 1C6R · PDBe 1C6R · UniProt P57736

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