Research workbench

E. COLI reca in complex with mgadp

Analyse E. COLI reca in complex with mgadp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1XMV
Type: protein
Length: 293 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Reca protein
UniProt: P0A7G6
Ligands: ADP, MG
Pockets: 4 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Reca protein	protein	293	43% helix, 26% strand	P0A7G6

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	216	0.52	0.77	28	MG, ADP
2	185	0.46	0.75	33	empty
3	62	0.32	0.75	13	empty
4	68	0.30	0.74	18	empty

Compared structures

1XMV · E. coli RecA in complex with MgADP · the same entry in another collection · chain A against A, TM-score 1.00
P0A7G6 · AlphaFold monomer V2.0 prediction for protein reca (P0A7G6) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A7G6
Elsewhere: RCSB PDB 1XMV · PDBe 1XMV · UniProt P0A7G6

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