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The crystal structures of the DNA binding sites of the RUNX1 transcription factor
Analyse The crystal structures of the DNA binding sites of the RUNX1 transcription… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1XJY
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*TP*CP*TP*GP*CP*GP*GP*TP*C)-3'; 5'-D(*TP*GP*AP*CP*CP*GP*CP*AP*G)-3'
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*TP*CP*TP*GP*CP*GP*GP*TP*C)-3' | dna | 8 | — | — |
| B | 5'-D(*TP*GP*AP*CP*CP*GP*CP*AP*G)-3' | dna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 396 Ų buried · 42 hydrogen bonds · nucleic-nucleic
Compared structures
- 1XJY · The crystal structures of the DNA binding sites of the RUNX1 transcription factor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1XJY · PDBe 1XJY
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