Research workbench
Backbone structure of cocosin, an 11S storage protein from cocos nucifera
Analyse Backbone structure of cocosin, an 11S storage protein from cocos nucifera in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1XGF
- Type
- protein
- Length
- 764 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cocosin
- Pockets
- 6 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cocosin | protein | 382 | 12% helix, 24% strand | — |
Pockets
6 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1108 | 0.73 | 0.77 | 105 | empty |
| 2 | 697 | 0.72 | 0.79 | 89 | empty |
| 3 | 815 | 0.71 | 0.78 | 110 | empty |
| 4 | 816 | 0.71 | 0.77 | 87 | empty |
| 5 | 828 | 0.70 | 0.77 | 92 | empty |
Interfaces
1 interface between chains.
- A–B · 418 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1XGF · Backbone Structure of COCOSIN, an 11S storage protein from cocos nucifera · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1XGF · PDBe 1XGF
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.