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Dimeric bovine tissue-extracted decorin, crystal form 1

Analyse Dimeric bovine tissue-extracted decorin, crystal form 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1XCD
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Decorin
UniProt: P21793
Ligands: NAG

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Decorin	protein	305	6% helix, 17% strand	P21793

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide, 3 glycan (disulfide, N-glycosylation).

Compared structures

1XCD · Dimeric bovine tissue-extracted decorin, crystal form 1 · the same entry in another collection · chain A against A, TM-score 1.00
P21793 · AlphaFold monomer V2.0 prediction for decorin (P21793) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21793
Elsewhere: RCSB PDB 1XCD · PDBe 1XCD · UniProt P21793

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