Research workbench
1.9A crystal structure of the protein isdg from staphylococcus aureus aureus, structural genomics, mcsg
Analyse 1.9A crystal structure of the protein isdg from staphylococcus aureus aureus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1XBW
- Type
- protein
- Length
- 383 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein isdg
- UniProt
- Q8NX62
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · 4 distinct chains · 21% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein isdg | protein | 99 | 26% helix, 45% strand | Q8NX62 |
| B | Hypothetical protein isdg | protein | 96 | 16% helix, 47% strand | Q8NX62 |
| C | Hypothetical protein isdg | protein | 90 | 17% helix, 50% strand | Q8NX62 |
| D | Hypothetical protein isdg | protein | 98 | 24% helix, 45% strand | Q8NX62 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 758 | 0.71 | 0.77 | 69 | empty |
| 2 | 195 | 0.66 | 0.85 | 29 | empty |
| 3 | 121 | 0.65 | 0.88 | 20 | empty |
| 4 | 105 | 0.41 | 0.76 | 16 | empty |
| 5 | 79 | 0.36 | 0.75 | 14 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1598 Ų buried · 30 hydrogen bonds · protein-protein
- C–D · 1567 Ų buried · 23 hydrogen bonds · protein-protein
- A–C · 244 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 111 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 64 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1XBW · 1.9A Crystal Structure of the protein isdG from Staphylococcus aureus aureus, Structural… · the same entry in another collection · chain D against D, TM-score 1.00
- Q8NX62 · AlphaFold monomer V2.0 prediction for heme oxygenase (staphylobilin- producing) 1 (Q8NX62) · a predicted model of the same protein · chain D against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NX62
- Elsewhere: RCSB PDB 1XBW · PDBe 1XBW · UniProt Q8NX62
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