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The crystal structure of human adenovirus 2 penton base

Analyse The crystal structure of human adenovirus 2 penton base in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1X9P
Type: protein
Length: 460 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Penton protein
UniProt: P03276
Ligands: C15, SO4
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Penton protein	protein	460	15% helix, 32% strand	P03276

Ligands and binding sites

C15 · N-dodecyl-N,N-dimethyl-3-ammonio-1-propanesulfonate · ligand · 2 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.71	0.97	17	empty
2	215	0.57	0.79	33	empty
3	249	0.53	0.76	29	empty
4	126	0.49	0.79	16	empty
5	85	0.34	0.74	21	empty

Compared structures

1X9P · The crystal structure of human adenovirus 2 penton base · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03276
Elsewhere: RCSB PDB 1X9P · PDBe 1X9P · UniProt P03276

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