Research workbench
Crystal structure of the DNA nucleotide excision repair enzyme uvrb from thermus thermophilus
Analyse Crystal structure of the DNA nucleotide excision repair enzyme uvrb from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1C4O
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA nucleotide excision repair enzyme uvrb
- UniProt
- Q56243
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA nucleotide excision repair enzyme uvrb | protein | 504 | 48% helix, 15% strand | Q56243 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A
- BOG · octyl beta-D-glucopyranoside · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 624 | 0.70 | 0.78 | 74 | SO4 |
| 2 | 238 | 0.61 | 0.81 | 33 | empty |
| 3 | 244 | 0.60 | 0.80 | 36 | empty |
| 4 | 55 | 0.31 | 0.76 | 12 | empty |
Compared structures
- 1C4O · Crystal structure of the DNA nucleotide excision repair enzyme uvrb from thermus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q56243 · AlphaFold monomer V2.0 prediction for uvrabc system protein B (Q56243) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q56243
- Elsewhere: RCSB PDB 1C4O · PDBe 1C4O · UniProt Q56243
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