Research workbench
NMR structure determined for mlv nc complex with RNA sequence aacagu
Analyse NMR structure determined for mlv nc complex with RNA sequence aacagu in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WWD
- Type
- protein + RNA
- Length
- 62 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(P*AP*AP*CP*AP*GP*U)-3'; Nucleoprotein P10
- UniProt
- P03332
- Ligands
- ZN
Structure
solution nmr · 2 distinct chains · 5% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5'-R(P*AP*AP*CP*AP*GP*U)-3' | rna | 6 | — | — |
| A | Nucleoprotein P10 | protein | 56 | 5% helix, 4% strand | P03332 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 578 Ų buried · 17 hydrogen bonds · protein-nucleic
Compared structures
- 1WWD · NMR structure determined for MLV NC complex with RNA sequence AACAGU · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03332
- Elsewhere: RCSB PDB 1WWD · PDBe 1WWD · UniProt P03332
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