Research workbench
Agrocybe cylindracea galectin (ligand-free)
Analyse Agrocybe cylindracea galectin (ligand-free) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WW7
- Type
- protein
- Length
- 640 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galectin
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Galectin | protein | 160 | 3% helix, 54% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 871 | 0.70 | 0.75 | 90 | empty |
| 2 | 70 | 0.40 | 0.80 | 20 | empty |
Interfaces
4 interfaces between chains.
- B–C · 1018 Ų buried · 12 hydrogen bonds · protein-protein
- A–D · 1016 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 389 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 209 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1WW7 · Agrocybe cylindracea galectin (Ligand-free) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1WW7 · PDBe 1WW7
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