Research workbench
Crystal structure of uncharacterized protein ST2180 from sulfolobus tokodaii
Analyse Crystal structure of uncharacterized protein ST2180 from sulfolobus tokodaii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WVT
- Type
- protein
- Length
- 441 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ST2180
- UniProt
- Q96YJ2
- Pockets
- 7 · best druggability 0.75
Structure
x-ray diffraction · 3 distinct chains · 73% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein ST2180 | protein | 148 | 74% helix, 3% strand | Q96YJ2 |
| B | Hypothetical protein ST2180 | protein | 147 | 73% helix, 3% strand | Q96YJ2 |
| C | Hypothetical protein ST2180 | protein | 146 | 73% helix, 3% strand | Q96YJ2 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.75 | 0.99 | 23 | empty |
| 2 | 254 | 0.57 | 0.79 | 32 | empty |
| 3 | 266 | 0.57 | 0.77 | 31 | empty |
| 4 | 227 | 0.57 | 0.79 | 23 | empty |
| 5 | 202 | 0.55 | 0.79 | 20 | empty |
Interfaces
3 interfaces between chains.
- A–B · 890 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 828 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 826 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 1WVT · Crystal structure of uncharacterized protein ST2180 from Sulfolobus tokodaii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96YJ2
- Elsewhere: RCSB PDB 1WVT · PDBe 1WVT · UniProt Q96YJ2
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