Research workbench
Crystal structure of putative phosphatase from streptococcus mutans UA159
Analyse Crystal structure of putative phosphatase from streptococcus mutans UA159 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WVI
- Type
- protein
- Length
- 1,012 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative phosphatases involved in N-acetyl-glucosamine catabolism
- UniProt
- Q8DTD6
- Pockets
- 8 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative phosphatases involved in N-acetyl-glucosamine catabolism | protein | 253 | 41% helix, 23% strand | Q8DTD6 |
Pockets
8 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 695 | 0.77 | 0.82 | 82 | empty |
| 2 | 896 | 0.77 | 0.80 | 83 | empty |
| 3 | 357 | 0.68 | 0.81 | 41 | empty |
| 4 | 273 | 0.67 | 0.83 | 38 | empty |
| 5 | 218 | 0.56 | 0.79 | 29 | empty |
Interfaces
4 interfaces between chains.
- B–C · 1198 Ų buried · 18 hydrogen bonds · protein-protein
- A–D · 1170 Ų buried · 13 hydrogen bonds · protein-protein
- B–D · 1067 Ų buried · 18 hydrogen bonds · protein-protein
- A–C · 1011 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 1WVI · Crystal structure of putative phosphatase from Streptococcus mutans UA159 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DTD6
- Elsewhere: RCSB PDB 1WVI · PDBe 1WVI · UniProt Q8DTD6
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