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Crystal structure of rhodanese homolog TT1651 from an extremely thermophilic bacterium thermus thermophilus HB8

Analyse Crystal structure of rhodanese homolog TT1651 from an extremely thermophilic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1WV9
Type: protein
Length: 173 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rhodanese homolog TT1651
UniProt: Q5SKN0
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 30% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rhodanese homolog TT1651	protein	87	33% helix, 18% strand	Q5SKN0
B	Rhodanese homolog TT1651	protein	86	27% helix, 19% strand	Q5SKN0

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.36	0.75	23	empty

Interfaces

1 interface between chains.

A–B · 412 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

1WV9 · Crystal Structure of Rhodanese Homolog TT1651 from an Extremely Thermophilic Bacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SKN0
Elsewhere: RCSB PDB 1WV9 · PDBe 1WV9 · UniProt Q5SKN0

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