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Crystal structure of project id TT0172 from thermus thermophilus HB8
Analyse Crystal structure of project id TT0172 from thermus thermophilus HB8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WS9
- Type
- protein
- Length
- 772 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl-CoA dehydrogenase
- UniProt
- Q5SGZ2
- Pockets
- 7 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Acyl-CoA dehydrogenase | protein | 386 | 57% helix, 15% strand | Q5SGZ2 |
Pockets
7 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 499 | 0.72 | 0.81 | 51 | empty |
| 2 | 496 | 0.71 | 0.81 | 55 | empty |
| 3 | 375 | 0.57 | 0.75 | 32 | empty |
| 4 | 349 | 0.57 | 0.75 | 31 | empty |
| 5 | 141 | 0.54 | 0.81 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 1835 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 1WS9 · Crystal structure of project ID TT0172 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SGZ2
- Elsewhere: RCSB PDB 1WS9 · PDBe 1WS9 · UniProt Q5SGZ2
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