Research workbench

23S rRNA structure fitted to a cryo-electron microscopic MAP at 7.5 ångströms resolution

Analyse 23S rRNA structure fitted to a cryo-electron microscopic MAP at 7.5 ångströms… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1C2W
Type: RNA
Length: 2,904 nucleotides
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 23S ribosomal RNA
Pockets: 20 · best druggability 0.85

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	23S ribosomal RNA	rna	2904	—	—

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	844	0.85	0.88	61	empty
2	1129	0.82	0.84	66	empty
3	1186	0.81	0.84	48	empty
4	1056	0.81	0.83	47	empty
5	801	0.80	0.84	59	empty

Modifications

Observed in the structure: 13 modified (nucleotide modification).

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1C2W · PDBe 1C2W

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