Research workbench
Crystal structure of nipah virus fusion core
Analyse Crystal structure of nipah virus fusion core in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WP7
- Type
- protein
- Length
- 188 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fusion protein
- UniProt
- Q8QU00
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 3 distinct chains · 90% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fusion protein | protein | 64 | 89% helix, 0% strand | Q8QU00 |
| B | Fusion protein | protein | 63 | 90% helix, 0% strand | Q8QU00 |
| C | Fusion protein | protein | 61 | 92% helix, 0% strand | Q8QU00 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.75 | 0.99 | 18 | empty |
Interfaces
3 interfaces between chains.
- A–B · 942 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 929 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 904 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1WP7 · crystal structure of Nipah Virus fusion core · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8QU00
- Elsewhere: RCSB PDB 1WP7 · PDBe 1WP7 · UniProt Q8QU00
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