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Solution structure of the RNA binding domain from hypothetical protein BAB23382

Analyse Solution structure of the RNA binding domain from hypothetical protein BAB23382 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1WHV
Type: protein
Length: 100 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: POLY(A)-specific ribonuclease
UniProt: Q8VDG3
Pockets: 1 · best druggability 0.31

Structure

solution nmr · 1 distinct chain · 29% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	POLY(A)-specific ribonuclease	protein	100	29% helix, 18% strand	Q8VDG3

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.31	0.74	14	empty

Compared structures

1WHV · Solution structure of the RNA binding domain from hypothetical protein BAB23382 · the same entry in another collection · chain A against A, TM-score 1.00
Q8VDG3 · AlphaFold monomer V2.0 prediction for POLY(A)-specific ribonuclease parn (Q8VDG3) · a predicted model of the same protein · chain A against A, TM-score 0.78

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8VDG3
Elsewhere: RCSB PDB 1WHV · PDBe 1WHV · UniProt Q8VDG3

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