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Structure of bannavirus VP9

Analyse Structure of bannavirus VP9 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1W9Z
Type: protein
Length: 768 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: VP9
UniProt: Q9YWN5
Pockets: 11 · best druggability 0.78

Structure

x-ray diffraction · 2 distinct chains · 25% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	VP9	protein	257	25% helix, 31% strand	Q9YWN5
C	VP9	protein	254	25% helix, 30% strand	Q9YWN5

Pockets

11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	207	0.78	0.93	39	empty
2	180	0.77	0.93	34	empty
3	139	0.77	0.95	31	empty
4	56	0.53	0.88	15	empty
5	155	0.47	0.76	20	empty

Interfaces

3 interfaces between chains.

B–C · 1984 Å² buried · 32 hydrogen bonds · protein-protein
A–B · 1980 Å² buried · 32 hydrogen bonds · protein-protein
A–C · 1953 Å² buried · 33 hydrogen bonds · protein-protein

Compared structures

1W9Z · Structure of Bannavirus VP9 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YWN5
Elsewhere: RCSB PDB 1W9Z · PDBe 1W9Z · UniProt Q9YWN5

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