Research workbench
Feglymycin P64 crystal form
Analyse Feglymycin P64 crystal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1W7R
- Type
- protein
- Length
- 104 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Feglymycin
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 85% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Feglymycin | protein | 13 | 0% helix, 85% strand | — |
Ligands and binding sites
- IPA · Isopropyl alcohol · additive · 4 copies · chains A, B, E, F, G, H
- FLC · Citrate anion · additive · chains H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
10 interfaces between chains.
- A–B · 1068 Ų buried · 34 hydrogen bonds · protein-protein
- E–F · 1067 Ų buried · 34 hydrogen bonds · protein-protein
- C–D · 1067 Ų buried · 33 hydrogen bonds · protein-protein
- G–H · 1063 Ų buried · 32 hydrogen bonds · protein-protein
- B–D · 304 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 72 modified (nonstandard).
Compared structures
- 1W7R · Feglymycin P64 crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1W7R · PDBe 1W7R
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