Research workbench
Ftsz dimer, empty (M. jannaschii)
Analyse Ftsz dimer, empty (M. jannaschii) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1W59
- Type
- protein
- Length
- 693 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell division protein ftsz homolog 1
- UniProt
- Q57816
- Ligands
- SO4
- Pockets
- 8 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell division protein ftsz homolog 1 | protein | 350 | 47% helix, 23% strand | Q57816 |
| B | Cell division protein ftsz homolog 1 | protein | 343 | 43% helix, 24% strand | Q57816 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 724 | 0.81 | 0.85 | 77 | SO4 |
| 2 | 126 | 0.60 | 0.85 | 33 | empty |
| 3 | 159 | 0.51 | 0.79 | 31 | SO4 |
| 4 | 150 | 0.49 | 0.78 | 31 | empty |
| 5 | 63 | 0.40 | 0.80 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1235 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57816
- Elsewhere: RCSB PDB 1W59 · PDBe 1W59 · UniProt Q57816
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