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Crystal structure of the proximal bah domain of polybromo

Analyse Crystal structure of the proximal bah domain of polybromo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1W4S
Type: protein
Length: 146 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polybromo 1 protein
UniProt: Q90941
Ligands: CL
Pockets: 3 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polybromo 1 protein	protein	146	9% helix, 47% strand	Q90941

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.45	0.80	17	empty
2	52	0.35	0.79	12	empty
3	51	0.25	0.73	13	empty

Compared structures

1W4S · Crystal structure of the proximal BAH domain of polybromo · the same entry in another collection · chain A against A, TM-score 1.00
Q90941 · AlphaFold monomer V2.0 prediction for protein polybromo-1 (Q90941) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q90941
Elsewhere: RCSB PDB 1W4S · PDBe 1W4S · UniProt Q90941

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