Research workbench

Pyrr of mycobacterium tuberculosis as a potential drug target

Analyse Pyrr of mycobacterium tuberculosis as a potential drug target in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1W30
Type: protein
Length: 351 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pyrr bifunctional protein
EC: 2.4.2.9
UniProt: P71807
Pockets: 6 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pyrr bifunctional protein (EC 2.4.2.9)	protein	174	32% helix, 29% strand	P71807
B	Pyrr bifunctional protein (EC 2.4.2.9)	protein	177	32% helix, 28% strand	P71807

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.51	0.87	15	empty
2	86	0.43	0.79	18	empty
3	115	0.37	0.74	23	empty
4	98	0.35	0.74	19	empty
5	85	0.34	0.75	21	empty

Interfaces

1 interface between chains.

A–B · 871 Å² buried · 26 hydrogen bonds · protein-protein

Compared structures

1W30 · PyrR of Mycobacterium Tuberculosis as a potential drug target · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P71807
Elsewhere: RCSB PDB 1W30 · PDBe 1W30 · UniProt P71807

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