Research workbench
Crystal structure of psbq protein of photosystem II from higher plants
Analyse Crystal structure of psbq protein of photosystem II from higher plants in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VYK
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxygen-evolving enhancer protein 3
- UniProt
- P12301
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oxygen-evolving enhancer protein 3 | protein | 129 | 73% helix, 3% strand | P12301 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.30 | 0.76 | 14 | empty |
Compared structures
- 1VYK · Crystal structure of psbq protein of photosystem II from higher plants · the same entry in another collection · chain A against A, TM-score 1.00
- P12301 · AlphaFold monomer V2.0 prediction for oxygen-evolving enhancer protein 3, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12301
- Elsewhere: RCSB PDB 1VYK · PDBe 1VYK · UniProt P12301
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