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Crystal structure of a DUF72 family protein (EF0366) from enterococcus faecalis V583 at 2.52 a resolution

Analyse Crystal structure of a DUF72 family protein (EF0366) from enterococcus faecalis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1VPY
Type: protein
Length: 251 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (hypothetical protein EF0366)
Ligands: UNL, ZN
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (hypothetical protein EF0366)	protein	251	37% helix, 18% strand	—

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
ZN · Zinc ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.43	0.78	28	empty

Modifications

Observed in the structure: 9 modified, 1 covalent (engineered, covalent ligand).

Compared structures

1VPY · CRYSTAL STRUCTURE OF a DUF72 family protein (EF0366) FROM ENTEROCOCCUS FAECALIS V583 AT… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1VPY · PDBe 1VPY

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