Research workbench
Arabidopsis thaliana tbp (dimer)
Analyse Arabidopsis thaliana tbp (dimer) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VOK
- Type
- protein
- Length
- 380 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tata-box-binding protein
- UniProt
- P28147
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tata-box-binding protein | protein | 192 | 25% helix, 33% strand | P28147 |
| B | Tata-box-binding protein | protein | 188 | 26% helix, 38% strand | P28147 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.50 | 0.80 | 24 | empty |
| 2 | 109 | 0.49 | 0.81 | 22 | empty |
| 3 | 65 | 0.46 | 0.84 | 21 | empty |
| 4 | 94 | 0.41 | 0.78 | 20 | empty |
| 5 | 69 | 0.34 | 0.76 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1658 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28147
- Elsewhere: RCSB PDB 1VOK · PDBe 1VOK · UniProt P28147
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