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Crystal structure of ribokinase (TM0960) from thermotoga maritima at 2.15 a resolution

Analyse Crystal structure of ribokinase (TM0960) from thermotoga maritima at 2.15 a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1VM7
Type: protein
Length: 596 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribokinase
EC: 2.7.1.15
UniProt: Q9X055
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribokinase (EC 2.7.1.15)	protein	299	40% helix, 24% strand	Q9X055
B	Ribokinase (EC 2.7.1.15)	protein	297	40% helix, 24% strand	Q9X055

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	688	0.71	0.78	70	empty
2	584	0.67	0.77	71	empty
3	59	0.43	0.82	14	empty
4	56	0.42	0.82	14	empty
5	69	0.30	0.74	17	empty

Interfaces

1 interface between chains.

A–B · 1232 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

1VM7 · Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X055
Elsewhere: RCSB PDB 1VM7 · PDBe 1VM7 · UniProt Q9X055

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