Research workbench
Crystal structure of 3-isopropylmalate dehydrogenase (TM0556) from thermotoga maritima at 1.90 a resolution
Analyse Crystal structure of 3-isopropylmalate dehydrogenase (TM0556) from thermotoga… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VLC
- Type
- protein
- Length
- 362 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-isopropylmalate dehydrogenase
- EC
- 1.1.1.85
- UniProt
- Q9WZ26
- Ligands
- CL
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-isopropylmalate dehydrogenase (EC 1.1.1.85) | protein | 362 | 48% helix, 20% strand | Q9WZ26 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 350 | 0.66 | 0.81 | 42 | empty |
| 2 | 209 | 0.50 | 0.76 | 32 | empty |
| 3 | 126 | 0.48 | 0.79 | 21 | empty |
Compared structures
- 1VLC · Crystal structure of 3-isopropylmalate dehydrogenase (TM0556) from Thermotoga maritima at… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9WZ26 · AlphaFold monomer V2.0 prediction for 3-isopropylmalate dehydrogenase (Q9WZ26) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZ26
- Elsewhere: RCSB PDB 1VLC · PDBe 1VLC · UniProt Q9WZ26
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