Research workbench
Transthyretin (del VAL122)
Analyse Transthyretin (del VAL122) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BZ8
- Type
- protein
- Length
- 252 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (transthyretin)
- UniProt
- P02766
- Pockets
- 2 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Protein (transthyretin) | protein | 126 | 6% helix, 45% strand | P02766 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.28 | 0.75 | 15 | empty |
| 2 | 52 | 0.25 | 0.73 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 922 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 1BZ8 · Transthyretin (del VAL122) · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02766
- Elsewhere: RCSB PDB 1BZ8 · PDBe 1BZ8 · UniProt P02766
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