Research workbench
Crystal structure of a putative modulator of a DNA gyrase (TM0727) from thermotoga maritima MSB8 at 1.95 a resolution
Analyse Crystal structure of a putative modulator of a DNA gyrase (TM0727) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VL4
- Type
- protein
- Length
- 856 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pmba-related protein
- UniProt
- Q9WZI6
- Pockets
- 11 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Pmba-related protein | protein | 428 | 25% helix, 41% strand | Q9WZI6 |
Pockets
11 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 899 | 0.72 | 0.76 | 75 | empty |
| 2 | 813 | 0.71 | 0.77 | 67 | empty |
| 3 | 284 | 0.55 | 0.76 | 38 | empty |
| 4 | 135 | 0.43 | 0.75 | 24 | empty |
| 5 | 138 | 0.42 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1218 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 1VL4 · Crystal structure of a putative modulator of a DNA gyrase (TM0727) from thermotoga… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZI6
- Elsewhere: RCSB PDB 1VL4 · PDBe 1VL4 · UniProt Q9WZI6
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