Research workbench
Crystal structure of a DUF151 family protein (TM0160) from thermotoga maritima at 1.90 a resolution
Analyse Crystal structure of a DUF151 family protein (TM0160) from thermotoga maritima… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VJL
- Type
- protein
- Length
- 280 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein TM0160
- UniProt
- Q9WY07
- Ligands
- UNL, CL
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein TM0160 | protein | 143 | 34% helix, 41% strand | Q9WY07 |
| B | Hypothetical protein TM0160 | protein | 137 | 30% helix, 44% strand | Q9WY07 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 455 | 0.69 | 0.80 | 61 | CL |
| 2 | 78 | 0.30 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1220 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 1VJL · Crystal structure of a duf151 family protein (tm0160) from thermotoga maritima at 1.90 A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WY07
- Elsewhere: RCSB PDB 1VJL · PDBe 1VJL · UniProt Q9WY07
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