Research workbench
Crystal structure of haemophilus influenzae protein HI0303, pfam DUF558
Analyse Crystal structure of haemophilus influenzae protein HI0303, pfam DUF558 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VHY
- Type
- protein
- Length
- 478 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein HI0303
- UniProt
- P44627
- Pockets
- 6 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein HI0303 | protein | 241 | 32% helix, 24% strand | P44627 |
| B | Hypothetical protein HI0303 | protein | 237 | 29% helix, 22% strand | P44627 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.56 | 0.78 | 27 | empty |
| 2 | 205 | 0.51 | 0.76 | 25 | empty |
| 3 | 65 | 0.41 | 0.80 | 17 | empty |
| 4 | 70 | 0.32 | 0.74 | 13 | empty |
| 5 | 64 | 0.29 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1812 Ų buried · 33 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 1VHY · Crystal structure of Haemophilus influenzae protein HI0303, Pfam DUF558 · the same entry in another collection · chain A against A, TM-score 1.00
- P44627 · AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase E… · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P44627
- Elsewhere: RCSB PDB 1VHY · PDBe 1VHY · UniProt P44627
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