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Crystal structure of a putative thioesterase

Analyse Crystal structure of a putative thioesterase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1VH9
Type: protein
Length: 276 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein ybdb
UniProt: P0A8Y8
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Hypothetical protein ybdb	protein	138	20% helix, 39% strand	P0A8Y8

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.27	0.73	12	empty

Interfaces

1 interface between chains.

A–B · 538 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

1VH9 · Crystal structure of a putative thioesterase · the same entry in another collection · chain A against A, TM-score 1.00
P0A8Y8 · AlphaFold monomer V2.0 prediction for proofreading thioesterase enth (P0A8Y8) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A8Y8
Elsewhere: RCSB PDB 1VH9 · PDBe 1VH9 · UniProt P0A8Y8

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