Research workbench
Crystal structure of a hypothetical protein
Analyse Crystal structure of a hypothetical protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VH0
- Type
- protein
- Length
- 930 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical UPF0247 protein SAV0024/SA0023
- UniProt
- P0A0N8
- Pockets
- 10 · best druggability 0.66
Structure
x-ray diffraction · 3 distinct chains · 46% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, E | Hypothetical UPF0247 protein SAV0024/SA0023 | protein | 157 | 46% helix, 22% strand | P0A0N8 |
| D | Hypothetical UPF0247 protein SAV0024/SA0023 | protein | 148 | 47% helix, 24% strand | P0A0N8 |
| F | Hypothetical UPF0247 protein SAV0024/SA0023 | protein | 154 | 45% helix, 21% strand | P0A0N8 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 592 | 0.66 | 0.76 | 58 | empty |
| 2 | 512 | 0.64 | 0.76 | 50 | empty |
| 3 | 359 | 0.63 | 0.78 | 46 | empty |
| 4 | 368 | 0.62 | 0.78 | 43 | empty |
| 5 | 219 | 0.57 | 0.79 | 28 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1296 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 1269 Ų buried · 16 hydrogen bonds · protein-protein
- E–F · 1215 Ų buried · 10 hydrogen bonds · protein-protein
- C–E · 337 Ų buried · 4 hydrogen bonds · protein-protein
- A–D · 284 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1VH0 · Crystal structure of a hypothetical protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A0N8
- Elsewhere: RCSB PDB 1VH0 · PDBe 1VH0 · UniProt P0A0N8
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