Research workbench
Crystal structure of an isozyme of citrate synthase from sulfolbus tokodaii STRAIN7
Analyse Crystal structure of an isozyme of citrate synthase from sulfolbus tokodaii… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VGM
- Type
- protein
- Length
- 752 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 378AA long hypothetical citrate synthase
- EC
- 2.3.3.1, 4.1.3.7
- UniProt
- Q96ZM7
- Ligands
- SO4
- Pockets
- 8 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 378AA long hypothetical citrate synthase (EC 2.3.3.1, 4.1.3.7) | protein | 376 | 59% helix, 6% strand | Q96ZM7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 531 | 0.74 | 0.82 | 49 | SO4, GOL |
| 2 | 377 | 0.69 | 0.82 | 38 | empty |
| 3 | 66 | 0.47 | 0.84 | 17 | empty |
| 4 | 122 | 0.41 | 0.76 | 28 | empty |
| 5 | 109 | 0.39 | 0.75 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 4420 Ų buried · 70 hydrogen bonds · protein-protein
Compared structures
- 1VGM · Crystal Structure of an Isozyme of Citrate Synthase from Sulfolbus tokodaii strain7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96ZM7
- Elsewhere: RCSB PDB 1VGM · PDBe 1VGM · UniProt Q96ZM7
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