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Crystal structure of octaprenyl pyrophosphate synthase from hyperthermophilic thermotoga maritima F132A/L128A/I123A/D62A mutant
Analyse Crystal structure of octaprenyl pyrophosphate synthase from hyperthermophilic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VG7
- Type
- protein
- Length
- 279 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Octoprenyl-diphosphate synthase
- EC
- 2.5.1.11
- UniProt
- Q9X1M1
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Octoprenyl-diphosphate synthase (EC 2.5.1.11) | protein | 279 | 75% helix, 1% strand | Q9X1M1 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 473 | 0.68 | 0.79 | 45 | empty |
| 2 | 158 | 0.48 | 0.76 | 17 | empty |
| 3 | 62 | 0.29 | 0.74 | 17 | empty |
Compared structures
- 1VG7 · Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1M1
- Elsewhere: RCSB PDB 1VG7 · PDBe 1VG7 · UniProt Q9X1M1
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