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Wild-type plastocyanin from silene

Analyse Wild-type plastocyanin from silene in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BYO
Type: protein
Length: 198 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (plastocyanin)
UniProt: P07030
Ligands: CU

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein (plastocyanin)	protein	99	4% helix, 37% strand	P07030

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 207 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

1BYO · Wild-type plastocyanin from silene · the same entry in another collection · chain A against A, TM-score 1.00
P07030 · AlphaFold monomer V2.0 prediction for plastocyanin, chloroplastic (P07030) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07030
Elsewhere: RCSB PDB 1BYO · PDBe 1BYO · UniProt P07030

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