Research workbench
Atomic resolution structure of atratoxin-B, one short-chain neurotoxin from naja atra
Analyse Atomic resolution structure of atratoxin-B, one short-chain neurotoxin from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VB0
- Type
- protein
- Length
- 61 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cobrotoxin B
- UniProt
- P80958
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cobrotoxin B | protein | 61 | 0% helix, 44% strand | P80958 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1VB0 · Atomic resolution structure of atratoxin-b, one short-chain neurotoxin from Naja atra · the same entry in another collection · chain A against A, TM-score 1.00
- P80958 · AlphaFold monomer V2.0 prediction for cobrotoxin-B (P80958) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80958
- Elsewhere: RCSB PDB 1VB0 · PDBe 1VB0 · UniProt P80958
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