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Crystal structure of alginate lyase PA1167 from pseudomonas aeruginosa at 2.0 a resolution
Analyse Crystal structure of alginate lyase PA1167 from pseudomonas aeruginosa at 2.0 a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1VAV
- Type
- protein
- Length
- 444 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alginate lyase PA1167
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alginate lyase PA1167 | protein | 222 | 6% helix, 53% strand | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.44 | 0.77 | 20 | empty |
| 2 | 123 | 0.37 | 0.74 | 20 | empty |
| 3 | 137 | 0.37 | 0.72 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 594 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 1VAV · Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1VAV · PDBe 1VAV
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