Research workbench
Crystal structure of hypothetical protein of unknown function from pyrococcus horikoshii OT3
Analyse Crystal structure of hypothetical protein of unknown function from pyrococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1V96
- Type
- protein
- Length
- 290 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein PH0500
- UniProt
- O58236
- Pockets
- 1 · best druggability 0.26
Structure
x-ray diffraction · 2 distinct chains · 65% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein PH0500 | protein | 146 | 65% helix, 13% strand | O58236 |
| B | Hypothetical protein PH0500 | protein | 144 | 65% helix, 13% strand | O58236 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.26 | 0.73 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1266 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 1V96 · Crystal structure of hypothetical protein of unknown function from pyrococcus horikoshii… · the same entry in another collection · chain A against A, TM-score 1.00
- O58236 · AlphaFold monomer V2.0 prediction for ribonuclease VAPC4 (O58236) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58236
- Elsewhere: RCSB PDB 1V96 · PDBe 1V96 · UniProt O58236
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