Research workbench
Solution structure of the ring-H2 finger domain of mouse deltex protein 2
Analyse Solution structure of the ring-H2 finger domain of mouse deltex protein 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1V87
- Type
- protein
- Length
- 114 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Deltex protein 2
- UniProt
- Q8R3P2
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.48
Structure
solution nmr · 1 distinct chain · 16% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Deltex protein 2 | protein | 114 | 16% helix, 12% strand | Q8R3P2 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.48 | 0.74 | 26 | empty |
Compared structures
- 1V87 · Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2 · the same entry in another collection · chain A against A, TM-score 1.00
- Q8R3P2 · AlphaFold monomer V2.0 prediction for probable E3 ubiquitin-protein ligase DTX2 (Q8R3P2) · a predicted model of the same protein · chain A against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8R3P2
- Elsewhere: RCSB PDB 1V87 · PDBe 1V87 · UniProt Q8R3P2
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