Research workbench

Crystal structure of S.POMBE serine racemase

Analyse Crystal structure of S.POMBE serine racemase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1V71
Type: protein
Length: 318 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein C320.14 in chromosome III
EC: 5.1.1.-
UniProt: O59791
Ligands: PLP, MG
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein C320.14 in chromosome III (EC 5.1.1.-)	protein	318	51% helix, 15% strand	O59791

Ligands and binding sites

PLP · Pyridoxal-5'-phosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	554	0.69	0.78	65	PLP

Modifications

Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).

Compared structures

1V71 · Crystal Structure of S.pombe Serine Racemase · the same entry in another collection · chain A against A, TM-score 1.00
O59791 · AlphaFold monomer V2.0 prediction for serine racemase (O59791) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O59791
Elsewhere: RCSB PDB 1V71 · PDBe 1V71 · UniProt O59791

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.