Research workbench
Structure of BCL-XL/BAK peptide complex, NMR, minimized average structure
Analyse Structure of BCL-XL/BAK peptide complex, NMR, minimized average structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BXL
- Type
- protein
- Length
- 197 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BCL-xl; Bak peptide
- UniProt
- Q07817, Q16611
- Pockets
- 2 · best druggability 0.50
Structure
solution nmr · 2 distinct chains · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BCL-xl | protein | 181 | 62% helix, 0% strand | Q07817 |
| B | Bak peptide | protein | 16 | 56% helix, 0% strand | Q16611 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.50 | 0.76 | 27 | empty |
| 2 | 63 | 0.31 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 918 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 1BXL · Structure of BCL-XL/BAK peptide complex, NMR, minimized average structure · the same entry in another collection · chain A against A, TM-score 1.00
- Q07817 · AlphaFold monomer V2.0 prediction for BCL-2-like protein 1 (Q07817) · a predicted model of the same protein · chain A against A, TM-score 0.77
- Q16611 · AlphaFold monomer V2.0 prediction for BCL-2 homologous ANTAGONIST/KILLER (Q16611) · a predicted model of the same protein · chain B against A, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q07817
- Every structure of UniProt Q16611
- Elsewhere: RCSB PDB 1BXL · PDBe 1BXL · UniProt Q07817 · UniProt Q16611
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